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Probing Ion Channels with Water-Soluble Polymers

Added at the same weight concentration, differently sized polymers reduce bulk solution conductivity to a similar extent. However, their action on the channel conductance is size-dependent. To enter the channel pore, large polymers have to overcome a significant entropic barrier, whereas small polymers are able to penetrate and inhibit ion current through the pore more efficiently. Therefore, the polymer-induced change in channel conductance quantitatively gauges the channel size.

Related references:

O.V. Krasilnikov and S.M. Bezrukov. Polymer partitioning from non-ideal solutions into protein voids. Macromolecules, 2004, 37:2650-2657. [PDF]

E.M. Nestorovich, T.K. Rostovtseva, and S.M. Bezrukov. Residue ionization and ion transport through OmpF channels. Biophysical Journal, 2003, 85 :3718-3729. [PDF]

K.S. Stojilkovic, A.M. Berezhkovskii, V.Yu. Zitserman, and S.M. Bezrukov. Conductivity and microviscosity of electrolyte solutions containing polyethylene glycols. Journal of Chemical Physics, 2003, 119:6973-6978. [PDF]

T.K. Rostovtseva, E.M. Nestorovich, and S.M. Bezrukov. Partitioning of differently sized poly(ethylene glycol)s into OmpF porin. Biophysical Journal, 2002, 82:160-169. [PDF]

S.M. Bezrukov and J.J. Kasianowicz. Neutral polymers in the nanopores of alamethicin and alpha-hemolysin. Biol. Membrany, 2001, 18:453-457. [PDF]

A.M. Berezhkovskii, S.M. Bezrukov, D.J. Bicout, and G.H. Weiss. The influence of polymer on the diffusion of a spherical tracer. Journal of Chemical Physics, 1999, 111:5641-5644. [PDF]

P.G. Merzlyak, L.N. Yuldasheva, C.G. Rodrigues, C.M.M. Carneiro, O.V. Krasilnikov, and S.M. Bezrukov. Polymeric nonelectrolytes to probe pore geometry: Application to the alpha-toxin transmembrane channel. Biophysical Journal, 1999, 77:3032-3033. [PDF]

Yu.A. Kaulin, L.V. Schagina, S.M. Bezrukov, V.V. Malev, A.M. Feigin, J.Y. Takemoto, J.H. Teeter, J.G. Brand. Cluster organization of ion channels formed by the antibiotic syringomycin E in bilayer lipid membranes. Biophysical Journal, 1998, 74:2918-2925. [PDF]

S.M. Bezrukov and J.J. Kasianowicz. The charge state of an ion channel controls neutral polymer entry into its pore. European Biophysics Journal, 1997, 26:471-476. [PDF]

S.M. Bezrukov, I. Vodyanoy, R.A. Brutyan, and J.J. Kasianowicz. Dynamics and free energy of polymers partitioning into a nanoscale pore. Macromolecules, 1996, 29:8517-8522. [PDF]

V.A. Parsegian, S.M. Bezrukov, and I. Vodyanoy. Watching small molecules move: interrogating ionic channels using small solutes. Bioscience Reports, 1995, 6:503-514. [PDF]

S.M. Bezrukov, I. Vodyanoy, and V.A. Parsegian. Counting polymers moving through a single ion channel. Nature (London), 1994, 370:279-281. [PDF]

I. Vodyanoy, S.M. Bezrukov, and V.A. Parsegian. Probing alamethicin channels with water-soluble polymers. Size-modulated osmotic action. Biophysical Journal, 1993, 65:2097-2105. [PDF]

S.M. Bezrukov and I. Vodyanoy. Probing alamethicin channels with water-soluble polymers. Effect on conductance of channel states. Biophysical Journal, 1993, 64:16-25. [PDF]

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